Package: scmarkeragent 0.1.0

scmarkeragent: Evidence-Grounded Cell-Type Annotation for Seurat Objects

Annotates single-cell RNA-seq clusters by measuring curated marker panels in the data and letting a language model decide which identity those measurements support, with every claim resolving to a publication and its source sentence. Reads Seurat .rds objects natively and runs from raw counts, against one shared configuration, one set of prompts and one marker resource.

Authors:Haoran Chen [aut, cre], Chen Cao [aut]

scmarkeragent_0.1.0.tar.gz
scmarkeragent_0.1.0.zip(r-4.7-any)scmarkeragent_0.1.0.zip(r-4.6-any)scmarkeragent_0.1.0.zip(r-4.5-any)
scmarkeragent_0.1.0.tgz(r-4.6-any)scmarkeragent_0.1.0.tgz(r-4.5-any)
scmarkeragent_0.1.0.tar.gz(r-4.7-any)scmarkeragent_0.1.0.tar.gz(r-4.6-any)
scmarkeragent_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
scmarkeragent/json (API)

# Install 'scmarkeragent' in R:
install.packages('scmarkeragent', repos = c('https://haoran-code.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/haoran-code/scmarkeragent/issues

On CRAN:

Conda:

1.70 score 1 stars 2 scripts 5 exports 144 dependencies

Last updated from:7c7a4f14c9. Checks:7 OK, 2 NOTE. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK175
source / vignettesOK241
linux-releaseOK171
macos-releaseOK84
macos-oldrelNOTE117
windows-develOK95
windows-releaseOK179
windows-oldrelNOTE79
wasm-releaseOK305

Exports:annotatecheck_inputdownload_resourcesresource_indexverify_resources

Dependencies:abindaskpassbase64encBHbitopsbslibcachemcaToolscliclustercodetoolscommonmarkcowplotcpp11crosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngevaluatefarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemimeminiUInlmeopensslotelparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprestoprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS7sassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzipzoo